scipy.io.

mmwrite#

scipy.io.mmwrite(target, a, comment=None, field=None, precision=None, symmetry='AUTO')[source]#

Writes the sparse or dense array a to Matrix Market file-like target.

Parameters:
targetstr or file-like

Matrix Market filename (extension .mtx) or open file-like object.

aarray like

Sparse or dense 2-D array.

commentstr, optional

Comments to be prepended to the Matrix Market file.

fieldNone or str, optional

Either ‘real’, ‘complex’, ‘pattern’, or ‘integer’.

precisionNone or int, optional

Number of digits to display for real or complex values.

symmetryNone or str, optional

Either ‘AUTO’, ‘general’, ‘symmetric’, ‘skew-symmetric’, or ‘hermitian’. If symmetry is None the symmetry type of ‘a’ is determined by its values. If symmetry is ‘AUTO’ the symmetry type of ‘a’ is either determined or set to ‘general’, at mmwrite’s discretion.

Returns:
None

Notes

Changed in version 1.12.0: C++ implementation.

Examples

>>> from io import BytesIO
>>> import numpy as np
>>> from scipy.sparse import coo_matrix
>>> from scipy.io import mmwrite

Write a small NumPy array to a matrix market file. The file will be written in the 'array' format.

>>> a = np.array([[1.0, 0, 0, 0], [0, 2.5, 0, 6.25]])
>>> target = BytesIO()
>>> mmwrite(target, a)
>>> print(target.getvalue().decode('latin1'))
%%MatrixMarket matrix array real general
%
2 4
1
0
0
2.5
0
0
0
6.25

Add a comment to the output file, and set the precision to 3.

>>> target = BytesIO()
>>> mmwrite(target, a, comment='\n Some test data.\n', precision=3)
>>> print(target.getvalue().decode('latin1'))
%%MatrixMarket matrix array real general
%
% Some test data.
%
2 4
1.00e+00
0.00e+00
0.00e+00
2.50e+00
0.00e+00
0.00e+00
0.00e+00
6.25e+00

Convert to a sparse matrix before calling mmwrite. This will result in the output format being 'coordinate' rather than 'array'.

>>> target = BytesIO()
>>> mmwrite(target, coo_matrix(a), precision=3)
>>> print(target.getvalue().decode('latin1'))
%%MatrixMarket matrix coordinate real general
%
2 4 3
1 1 1.00e+00
2 2 2.50e+00
2 4 6.25e+00

Write a complex Hermitian array to a matrix market file. Note that only six values are actually written to the file; the other values are implied by the symmetry.

>>> z = np.array([[3, 1+2j, 4-3j], [1-2j, 1, -5j], [4+3j, 5j, 2.5]])
>>> z
array([[ 3. +0.j,  1. +2.j,  4. -3.j],
       [ 1. -2.j,  1. +0.j, -0. -5.j],
       [ 4. +3.j,  0. +5.j,  2.5+0.j]])

>>> target = BytesIO()
>>> mmwrite(target, z, precision=2)
>>> print(target.getvalue().decode('latin1'))
%%MatrixMarket matrix array complex hermitian
%
3 3
3.0e+00 0.0e+00
1.0e+00 -2.0e+00
4.0e+00 3.0e+00
1.0e+00 0.0e+00
0.0e+00 5.0e+00
2.5e+00 0.0e+00

This method is threaded. The default number of threads is equal to the number of CPUs in the system. Use threadpoolctl to override:

>>> import threadpoolctl
>>>
>>> target = BytesIO()
>>> with threadpoolctl.threadpool_limits(limits=2):
...     mmwrite(target, a)
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