scipy.ndimage.binary_propagation#

scipy.ndimage.binary_propagation(input, structure=None, mask=None, output=None, border_value=0, origin=0)[source]#

Multidimensional binary propagation with the given structuring element.

Parameters

inputarray_like: Binary image to be propagated inside mask.
structurearray_like, optional: Structuring element used in the successive dilations. The output may depend on the structuring element, especially if mask has several connex components. If no structuring element is provided, an element is generated with a squared connectivity equal to one.
maskarray_like, optional: Binary mask defining the region into which input is allowed to propagate.
outputndarray, optional: Array of the same shape as input, into which the output is placed. By default, a new array is created.
border_valueint (cast to 0 or 1), optional: Value at the border in the output array.
originint or tuple of ints, optional: Placement of the filter, by default 0.

Returns

binary_propagationndarray: Binary propagation of input inside mask.

Notes

This function is functionally equivalent to calling binary_dilation with the number of iterations less than one: iterative dilation until the result does not change anymore.

The succession of an erosion and propagation inside the original image can be used instead of an opening for deleting small objects while keeping the contours of larger objects untouched.

References

1: http://cmm.ensmp.fr/~serra/cours/pdf/en/ch6en.pdf, slide 15.
2: I.T. Young, J.J. Gerbrands, and L.J. van Vliet, “Fundamentals of image processing”, 1998 ftp://qiftp.tudelft.nl/DIPimage/docs/FIP2.3.pdf

Examples

>>> from scipy import ndimage
>>> input = np.zeros((8, 8), dtype=int)
>>> input[2, 2] = 1
>>> mask = np.zeros((8, 8), dtype=int)
>>> mask[1:4, 1:4] = mask[4, 4]  = mask[6:8, 6:8] = 1
>>> input
array([[0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 1, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0]])
>>> mask
array([[0, 0, 0, 0, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 0, 0, 0, 1, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 1, 1],
       [0, 0, 0, 0, 0, 0, 1, 1]])
>>> ndimage.binary_propagation(input, mask=mask).astype(int)
array([[0, 0, 0, 0, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0]])
>>> ndimage.binary_propagation(input, mask=mask,\
... structure=np.ones((3,3))).astype(int)
array([[0, 0, 0, 0, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 1, 1, 1, 0, 0, 0, 0],
       [0, 0, 0, 0, 1, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0, 0, 0]])

>>> # Comparison between opening and erosion+propagation
>>> a = np.zeros((6,6), dtype=int)
>>> a[2:5, 2:5] = 1; a[0, 0] = 1; a[5, 5] = 1
>>> a
array([[1, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0],
       [0, 0, 1, 1, 1, 0],
       [0, 0, 1, 1, 1, 0],
       [0, 0, 1, 1, 1, 0],
       [0, 0, 0, 0, 0, 1]])
>>> ndimage.binary_opening(a).astype(int)
array([[0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0],
       [0, 0, 0, 1, 0, 0],
       [0, 0, 1, 1, 1, 0],
       [0, 0, 0, 1, 0, 0],
       [0, 0, 0, 0, 0, 0]])
>>> b = ndimage.binary_erosion(a)
>>> b.astype(int)
array([[0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0],
       [0, 0, 0, 1, 0, 0],
       [0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0]])
>>> ndimage.binary_propagation(b, mask=a).astype(int)
array([[0, 0, 0, 0, 0, 0],
       [0, 0, 0, 0, 0, 0],
       [0, 0, 1, 1, 1, 0],
       [0, 0, 1, 1, 1, 0],
       [0, 0, 1, 1, 1, 0],
       [0, 0, 0, 0, 0, 0]])

scipy.ndimage.binary_opening

scipy.ndimage.black_tophat