scipy.stats.bayes_mvs

scipy.stats.bayes_mvs(data, alpha=0.9)

Bayesian confidence intervals for the mean, var, and std.

Parameters:

data : array_like

Input data, if multi-dimensional it is flattened to 1-D by bayes_mvs. Requires 2 or more data points.

alpha : float, optional

Probability that the returned confidence interval contains the true parameter.

Returns:

mean_cntr, var_cntr, std_cntr : tuple

The three results are for the mean, variance and standard deviation, respectively. Each result is a tuple of the form:

(center, (lower, upper))

with center the mean of the conditional pdf of the value given the data, and (lower, upper) a confidence interval, centered on the median, containing the estimate to a probability alpha.

See also

mvsdist

Notes

Each tuple of mean, variance, and standard deviation estimates represent the (center, (lower, upper)) with center the mean of the conditional pdf of the value given the data and (lower, upper) is a confidence interval centered on the median, containing the estimate to a probability alpha.

Converts data to 1-D and assumes all data has the same mean and variance. Uses Jeffrey’s prior for variance and std.

Equivalent to tuple((x.mean(), x.interval(alpha)) for x in mvsdist(dat))

References

T.E. Oliphant, “A Bayesian perspective on estimating mean, variance, and standard-deviation from data”, http://scholarsarchive.byu.edu/facpub/278, 2006.

Examples

First a basic example to demonstrate the outputs:

>>> from scipy import stats
>>> data = [6, 9, 12, 7, 8, 8, 13]
>>> mean, var, std = stats.bayes_mvs(data)
>>> mean
Mean(statistic=9.0, minmax=(7.1036502226125329, 10.896349777387467))
>>> var
Variance(statistic=10.0, minmax=(3.176724206..., 24.45910382...))
>>> std
Std_dev(statistic=2.9724954732045084, minmax=(1.7823367265645143, 4.9456146050146295))

Now we generate some normally distributed random data, and get estimates of mean and standard deviation with 95% confidence intervals for those estimates:

>>> n_samples = 100000
>>> data = stats.norm.rvs(size=n_samples)
>>> res_mean, res_var, res_std = stats.bayes_mvs(data, alpha=0.95)

>>> import matplotlib.pyplot as plt
>>> fig = plt.figure()
>>> ax = fig.add_subplot(111)
>>> ax.hist(data, bins=100, normed=True, label='Histogram of data')
>>> ax.vlines(res_mean.statistic, 0, 0.5, colors='r', label='Estimated mean')
>>> ax.axvspan(res_mean.minmax[0],res_mean.minmax[1], facecolor='r',
...            alpha=0.2, label=r'Estimated mean (95% limits)')
>>> ax.vlines(res_std.statistic, 0, 0.5, colors='g', label='Estimated scale')
>>> ax.axvspan(res_std.minmax[0],res_std.minmax[1], facecolor='g', alpha=0.2,
...            label=r'Estimated scale (95% limits)')

>>> ax.legend(fontsize=10)
>>> ax.set_xlim([-4, 4])
>>> ax.set_ylim([0, 0.5])
>>> plt.show()

(Source code)