scipy.stats.wilcoxon#

scipy.stats.wilcoxon(x, y=None, zero_method='wilcox', correction=False, alternative='two-sided', mode='auto', *, axis=0, nan_policy='propagate')[source]#

Calculate the Wilcoxon signed-rank test.

The Wilcoxon signed-rank test tests the null hypothesis that two related paired samples come from the same distribution. In particular, it tests whether the distribution of the differences x - y is symmetric about zero. It is a non-parametric version of the paired T-test.

Parameters

xarray_like

Either the first set of measurements (in which case y is the second set of measurements), or the differences between two sets of measurements (in which case y is not to be specified.) Must be one-dimensional.

yarray_like, optional

Either the second set of measurements (if x is the first set of measurements), or not specified (if x is the differences between two sets of measurements.) Must be one-dimensional.

zero_method{“pratt”, “wilcox”, “zsplit”}, optional

The following options are available (default is “wilcox”):

“pratt”: Includes zero-differences in the ranking process, but drops the ranks of the zeros, see [4], (more conservative).

“wilcox”: Discards all zero-differences, the default.

“zsplit”: Includes zero-differences in the ranking process and split the zero rank between positive and negative ones.

correctionbool, optional

If True, apply continuity correction by adjusting the Wilcoxon rank statistic by 0.5 towards the mean value when computing the z-statistic if a normal approximation is used. Default is False.

alternative{“two-sided”, “greater”, “less”}, optional

The alternative hypothesis to be tested, see Notes. Default is “two-sided”.

mode{“auto”, “exact”, “approx”}

Method to calculate the p-value, see Notes. Default is “auto”.

axisint or None, default: 0

If an int, the axis of the input along which to compute the statistic. The statistic of each axis-slice (e.g. row) of the input will appear in a corresponding element of the output. If None, the input will be raveled before computing the statistic.

nan_policy{‘propagate’, ‘omit’, ‘raise’}

Defines how to handle input NaNs.

propagate: if a NaN is present in the axis slice (e.g. row) along which the statistic is computed, the corresponding entry of the output will be NaN.
omit: NaNs will be omitted when performing the calculation. If insufficient data remains in the axis slice along which the statistic is computed, the corresponding entry of the output will be NaN.
raise: if a NaN is present, a ValueError will be raised.

Returns

statisticfloat: If alternative is “two-sided”, the sum of the ranks of the differences above or below zero, whichever is smaller. Otherwise the sum of the ranks of the differences above zero.
pvaluefloat: The p-value for the test depending on alternative and mode.

See also

kruskal, mannwhitneyu

Notes

The test has been introduced in [4]. Given n independent samples (xi, yi) from a bivariate distribution (i.e. paired samples), it computes the differences di = xi - yi. One assumption of the test is that the differences are symmetric, see [2]. The two-sided test has the null hypothesis that the median of the differences is zero against the alternative that it is different from zero. The one-sided test has the null hypothesis that the median is positive against the alternative that it is negative (alternative == 'less'), or vice versa (alternative == 'greater.').

To derive the p-value, the exact distribution (mode == 'exact') can be used for sample sizes of up to 25. The default mode == 'auto' uses the exact distribution if there are at most 25 observations and no ties, otherwise a normal approximation is used (mode == 'approx').

The treatment of ties can be controlled by the parameter zero_method. If zero_method == 'pratt', the normal approximation is adjusted as in [5]. A typical rule is to require that n > 20 ([2], p. 383).

References

1: https://en.wikipedia.org/wiki/Wilcoxon_signed-rank_test
2(1,2): Conover, W.J., Practical Nonparametric Statistics, 1971.
3: Pratt, J.W., Remarks on Zeros and Ties in the Wilcoxon Signed Rank Procedures, Journal of the American Statistical Association, Vol. 54, 1959, pp. 655-667. DOI:10.1080/01621459.1959.10501526
4(1,2,3): Wilcoxon, F., Individual Comparisons by Ranking Methods, Biometrics Bulletin, Vol. 1, 1945, pp. 80-83. DOI:10.2307/3001968
5: Cureton, E.E., The Normal Approximation to the Signed-Rank Sampling Distribution When Zero Differences are Present, Journal of the American Statistical Association, Vol. 62, 1967, pp. 1068-1069. DOI:10.1080/01621459.1967.10500917

Examples

In [4], the differences in height between cross- and self-fertilized corn plants is given as follows:

>>> d = [6, 8, 14, 16, 23, 24, 28, 29, 41, -48, 49, 56, 60, -67, 75]

Cross-fertilized plants appear to be be higher. To test the null hypothesis that there is no height difference, we can apply the two-sided test:

>>> from scipy.stats import wilcoxon
>>> w, p = wilcoxon(d)
>>> w, p
(24.0, 0.041259765625)

Hence, we would reject the null hypothesis at a confidence level of 5%, concluding that there is a difference in height between the groups. To confirm that the median of the differences can be assumed to be positive, we use:

>>> w, p = wilcoxon(d, alternative='greater')
>>> w, p
(96.0, 0.0206298828125)

This shows that the null hypothesis that the median is negative can be rejected at a confidence level of 5% in favor of the alternative that the median is greater than zero. The p-values above are exact. Using the normal approximation gives very similar values:

>>> w, p = wilcoxon(d, mode='approx')
>>> w, p
(24.0, 0.04088813291185591)

Note that the statistic changed to 96 in the one-sided case (the sum of ranks of positive differences) whereas it is 24 in the two-sided case (the minimum of sum of ranks above and below zero).

scipy.stats.ranksums

scipy.stats.kruskal