scipy.ndimage.generic_filter

scipy.ndimage.generic_filter(input, function, size=None, footprint=None, output=None, mode='reflect', cval=0.0, origin=0, extra_arguments=(), extra_keywords=None)

Calculate a multi-dimensional filter using the given function.

At each element the provided function is called. The input values within the filter footprint at that element are passed to the function as a 1D array of double values.

Parameters:

input : array_like

The input array.

function : {callable, scipy.LowLevelCallable}

Function to apply at each element.

size : scalar or tuple, optional

See footprint, below. Ignored if footprint is given.

footprint : array, optional

Either size or footprint must be defined. size gives the shape that is taken from the input array, at every element position, to define the input to the filter function. footprint is a boolean array that specifies (implicitly) a shape, but also which of the elements within this shape will get passed to the filter function. Thus size=(n,m) is equivalent to footprint=np.ones((n,m)). We adjust size to the number of dimensions of the input array, so that, if the input array is shape (10,10,10), and size is 2, then the actual size used is (2,2,2). When footprint is given, size is ignored.

output : array or dtype, optional

The array in which to place the output, or the dtype of the returned array. By default an array of the same dtype as input will be created.

mode : str or sequence, optional

The mode parameter determines how the input array is extended when the filter overlaps a border. By passing a sequence of modes with length equal to the number of dimensions of the input array, different modes can be specified along each axis. Default value is ‘reflect’. The valid values and their behavior is as follows:

‘reflect’ (d c b a | a b c d | d c b a)

The input is extended by reflecting about the edge of the last pixel.

‘constant’ (k k k k | a b c d | k k k k)

The input is extended by filling all values beyond the edge with the same constant value, defined by the cval parameter.

‘nearest’ (a a a a | a b c d | d d d d)

The input is extended by replicating the last pixel.

‘mirror’ (d c b | a b c d | c b a)

The input is extended by reflecting about the center of the last pixel.

‘wrap’ (a b c d | a b c d | a b c d)

The input is extended by wrapping around to the opposite edge.

cval : scalar, optional

Value to fill past edges of input if mode is ‘constant’. Default is 0.0.

origin : int or sequence, optional

Controls the placement of the filter on the input array’s pixels. A value of 0 (the default) centers the filter over the pixel, with positive values shifting the filter to the left, and negative ones to the right. By passing a sequence of origins with length equal to the number of dimensions of the input array, different shifts can be specified along each axis.

extra_arguments : sequence, optional

Sequence of extra positional arguments to pass to passed function.

extra_keywords : dict, optional

dict of extra keyword arguments to pass to passed function.

Notes

This function also accepts low-level callback functions with one of the following signatures and wrapped in scipy.LowLevelCallable:

int callback(double *buffer, npy_intp filter_size,
             double *return_value, void *user_data)
int callback(double *buffer, intptr_t filter_size,
             double *return_value, void *user_data)

The calling function iterates over the elements of the input and output arrays, calling the callback function at each element. The elements within the footprint of the filter at the current element are passed through the buffer parameter, and the number of elements within the footprint through filter_size. The calculated value is returned in return_value. user_data is the data pointer provided to scipy.LowLevelCallable as-is.

The callback function must return an integer error status that is zero if something went wrong and one otherwise. If an error occurs, you should normally set the python error status with an informative message before returning, otherwise a default error message is set by the calling function.

In addition, some other low-level function pointer specifications are accepted, but these are for backward compatibility only and should not be used in new code.