scipy.spatial.KDTree.query_ball_point#

KDTree.query_ball_point(x, r, p=2.0, eps=0, workers=1, return_sorted=None, return_length=False)[source]#

Find all points within distance r of point(s) x.

Parameters:

xarray_like, shape tuple + (self.m,): The point or points to search for neighbors of.
rarray_like, float: The radius of points to return, must broadcast to the length of x.
pfloat, optional: Which Minkowski p-norm to use. Should be in the range [1, inf]. A finite large p may cause a ValueError if overflow can occur.
epsnonnegative float, optional: Approximate search. Branches of the tree are not explored if their nearest points are further than r / (1 + eps), and branches are added in bulk if their furthest points are nearer than r * (1 + eps).
workersint, optional: Number of jobs to schedule for parallel processing. If -1 is given all processors are used. Default: 1.

Added in version 1.6.0.
return_sortedbool, optional: Sorts returned indices if True and does not sort them if False. If None, does not sort single point queries, but does sort multi-point queries which was the behavior before this option was added.

Added in version 1.6.0.
return_lengthbool, optional: Return the number of points inside the radius instead of a list of the indices.

Added in version 1.6.0.

Returns:

resultslist or array of lists: If x is a single point, returns a list of the indices of the neighbors of x. If x is an array of points, returns an object array of shape tuple containing lists of neighbors.

Notes

If you have many points whose neighbors you want to find, you may save substantial amounts of time by putting them in a KDTree and using query_ball_tree.

Examples

>>> import numpy as np
>>> from scipy import spatial
>>> x, y = np.mgrid[0:5, 0:5]
>>> points = np.c_[x.ravel(), y.ravel()]
>>> tree = spatial.KDTree(points)
>>> sorted(tree.query_ball_point([2, 0], 1))
[5, 10, 11, 15]

Query multiple points and plot the results:

>>> import matplotlib.pyplot as plt
>>> points = np.asarray(points)
>>> plt.plot(points[:,0], points[:,1], '.')
>>> for results in tree.query_ball_point(([2, 0], [3, 3]), 1):
...     nearby_points = points[results]
...     plt.plot(nearby_points[:,0], nearby_points[:,1], 'o')
>>> plt.margins(0.1, 0.1)
>>> plt.show()

../../_images/scipy-spatial-KDTree-query_ball_point-1.png