- scipy.cluster.hierarchy.fclusterdata(X, t, criterion='inconsistent', metric='euclidean', depth=2, method='single', R=None)¶
Cluster observation data using a given metric.
Clusters the original observations in the n-by-m data matrix X (n observations in m dimensions), using the euclidean distance metric to calculate distances between original observations, performs hierarchical clustering using the single linkage algorithm, and forms flat clusters using the inconsistency method with t as the cut-off threshold.
A one-dimensional array T of length n is returned. T[i] is the index of the flat cluster to which the original observation i belongs.
X : (N, M) ndarray
N by M data matrix with N observations in M dimensions.
t : float
The threshold to apply when forming flat clusters.
criterion : str, optional
Specifies the criterion for forming flat clusters. Valid values are ‘inconsistent’ (default), ‘distance’, or ‘maxclust’ cluster formation algorithms. See fcluster for descriptions.
metric : str, optional
The distance metric for calculating pairwise distances. See distance.pdist for descriptions and linkage to verify compatibility with the linkage method.
depth : int, optional
The maximum depth for the inconsistency calculation. See inconsistent for more information.
method : str, optional
The linkage method to use (single, complete, average, weighted, median centroid, ward). See linkage for more information. Default is “single”.
R : ndarray, optional
The inconsistency matrix. It will be computed if necessary if it is not passed.
fclusterdata : ndarray
A vector of length n. T[i] is the flat cluster number to which original observation i belongs.
This function is similar to the MATLAB function clusterdata.