SciPy

scipy.stats.loggamma

scipy.stats.loggamma = <scipy.stats._continuous_distns.loggamma_gen object at 0x2adaa43f2890>[source]

A log gamma continuous random variable.

As an instance of rv_continuous class, loggamma object inherits from it a collection of generic methods (see below for the full list), and completes them with details specific for this particular distribution.

Notes

The probability density function for loggamma is:

loggamma.pdf(x, c) = exp(c*x-exp(x)) / gamma(c)

for all x, c > 0.

loggamma takes c as a shape parameter.

Examples

>>> from scipy.stats import loggamma
>>> import matplotlib.pyplot as plt
>>> fig, ax = plt.subplots(1, 1)

Calculate a few first moments:

>>> c = 0.414
>>> mean, var, skew, kurt = loggamma.stats(c, moments='mvsk')

Display the probability density function (pdf):

>>> x = np.linspace(loggamma.ppf(0.01, c),
...                 loggamma.ppf(0.99, c), 100)
>>> ax.plot(x, loggamma.pdf(x, c),
...        'r-', lw=5, alpha=0.6, label='loggamma pdf')

Alternatively, the distribution object can be called (as a function) to fix the shape, location and scale parameters. This returns a “frozen” RV object holding the given parameters fixed.

Freeze the distribution and display the frozen pdf:

>>> rv = loggamma(c)
>>> ax.plot(x, rv.pdf(x), 'k-', lw=2, label='frozen pdf')

Check accuracy of cdf and ppf:

>>> vals = loggamma.ppf([0.001, 0.5, 0.999], c)
>>> np.allclose([0.001, 0.5, 0.999], loggamma.cdf(vals, c))
True

Generate random numbers:

>>> r = loggamma.rvs(c, size=1000)

And compare the histogram:

>>> ax.hist(r, normed=True, histtype='stepfilled', alpha=0.2)
>>> ax.legend(loc='best', frameon=False)
>>> plt.show()

(Source code)

../_images/scipy-stats-loggamma-1.png

Methods

rvs(c, loc=0, scale=1, size=1, random_state=None) Random variates.
pdf(x, c, loc=0, scale=1) Probability density function.
logpdf(x, c, loc=0, scale=1) Log of the probability density function.
cdf(x, c, loc=0, scale=1) Cumulative density function.
logcdf(x, c, loc=0, scale=1) Log of the cumulative density function.
sf(x, c, loc=0, scale=1) Survival function (1 - cdf — sometimes more accurate).
logsf(x, c, loc=0, scale=1) Log of the survival function.
ppf(q, c, loc=0, scale=1) Percent point function (inverse of cdf — percentiles).
isf(q, c, loc=0, scale=1) Inverse survival function (inverse of sf).
moment(n, c, loc=0, scale=1) Non-central moment of order n
stats(c, loc=0, scale=1, moments='mv') Mean(‘m’), variance(‘v’), skew(‘s’), and/or kurtosis(‘k’).
entropy(c, loc=0, scale=1) (Differential) entropy of the RV.
fit(data, c, loc=0, scale=1) Parameter estimates for generic data.
expect(func, c, loc=0, scale=1, lb=None, ub=None, conditional=False, **kwds) Expected value of a function (of one argument) with respect to the distribution.
median(c, loc=0, scale=1) Median of the distribution.
mean(c, loc=0, scale=1) Mean of the distribution.
var(c, loc=0, scale=1) Variance of the distribution.
std(c, loc=0, scale=1) Standard deviation of the distribution.
interval(alpha, c, loc=0, scale=1) Endpoints of the range that contains alpha percent of the distribution

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