SciPy

Byte-swapping

Introduction to byte ordering and ndarrays

The ndarray is an object that provide a python array interface to data in memory.

It often happens that the memory that you want to view with an array is not of the same byte ordering as the computer on which you are running Python.

For example, I might be working on a computer with a little-endian CPU - such as an Intel Pentium, but I have loaded some data from a file written by a computer that is big-endian. Let’s say I have loaded 4 bytes from a file written by a Sun (big-endian) computer. I know that these 4 bytes represent two 16-bit integers. On a big-endian machine, a two-byte integer is stored with the Most Significant Byte (MSB) first, and then the Least Significant Byte (LSB). Thus the bytes are, in memory order:

  1. MSB integer 1
  2. LSB integer 1
  3. MSB integer 2
  4. LSB integer 2

Let’s say the two integers were in fact 1 and 770. Because 770 = 256 * 3 + 2, the 4 bytes in memory would contain respectively: 0, 1, 3, 2. The bytes I have loaded from the file would have these contents:

>>> big_end_str = chr(0) + chr(1) + chr(3) + chr(2)
>>> big_end_str
'\x00\x01\x03\x02'

We might want to use an ndarray to access these integers. In that case, we can create an array around this memory, and tell numpy that there are two integers, and that they are 16 bit and big-endian:

>>> import numpy as np
>>> big_end_arr = np.ndarray(shape=(2,),dtype='>i2', buffer=big_end_str)
>>> big_end_arr[0]
1
>>> big_end_arr[1]
770

Note the array dtype above of >i2. The > means ‘big-endian’ (< is little-endian) and i2 means ‘signed 2-byte integer’. For example, if our data represented a single unsigned 4-byte little-endian integer, the dtype string would be <u4.

In fact, why don’t we try that?

>>> little_end_u4 = np.ndarray(shape=(1,),dtype='<u4', buffer=big_end_str)
>>> little_end_u4[0] == 1 * 256**1 + 3 * 256**2 + 2 * 256**3
True

Returning to our big_end_arr - in this case our underlying data is big-endian (data endianness) and we’ve set the dtype to match (the dtype is also big-endian). However, sometimes you need to flip these around.

Changing byte ordering

As you can imagine from the introduction, there are two ways you can affect the relationship between the byte ordering of the array and the underlying memory it is looking at:

  • Change the byte-ordering information in the array dtype so that it interprets the undelying data as being in a different byte order. This is the role of arr.newbyteorder()
  • Change the byte-ordering of the underlying data, leaving the dtype interpretation as it was. This is what arr.byteswap() does.

The common situations in which you need to change byte ordering are:

  1. Your data and dtype endianess don’t match, and you want to change the dtype so that it matches the data.
  2. Your data and dtype endianess don’t match, and you want to swap the data so that they match the dtype
  3. Your data and dtype endianess match, but you want the data swapped and the dtype to reflect this

Data and dtype endianness don’t match, change dtype to match data

We make something where they don’t match:

>>> wrong_end_dtype_arr = np.ndarray(shape=(2,),dtype='<i2', buffer=big_end_str)
>>> wrong_end_dtype_arr[0]
256

The obvious fix for this situation is to change the dtype so it gives the correct endianness:

>>> fixed_end_dtype_arr = wrong_end_dtype_arr.newbyteorder()
>>> fixed_end_dtype_arr[0]
1

Note the the array has not changed in memory:

>>> fixed_end_dtype_arr.tostring() == big_end_str
True

Data and type endianness don’t match, change data to match dtype

You might want to do this if you need the data in memory to be a certain ordering. For example you might be writing the memory out to a file that needs a certain byte ordering.

>>> fixed_end_mem_arr = wrong_end_dtype_arr.byteswap()
>>> fixed_end_mem_arr[0]
1

Now the array has changed in memory:

>>> fixed_end_mem_arr.tostring() == big_end_str
False

Data and dtype endianness match, swap data and dtype

You may have a correctly specified array dtype, but you need the array to have the opposite byte order in memory, and you want the dtype to match so the array values make sense. In this case you just do both of the previous operations:

>>> swapped_end_arr = big_end_arr.byteswap().newbyteorder()
>>> swapped_end_arr[0]
1
>>> swapped_end_arr.tostring() == big_end_str
False

An easier way of casting the data to a specific dtype and byte ordering can be achieved with the ndarray astype method:

>>> swapped_end_arr = big_end_arr.astype('<i2')
>>> swapped_end_arr[0]
1
>>> swapped_end_arr.tostring() == big_end_str
False